An object of class Seurat 42748 features across 5536 samples within 2 assays Active assay: SCT (15481 features, 3000 variable features) 1 other assay present: RNA 3 dimensional reductions calculated: pca, umap, tsne
The Seurat object was generated with Seurat 3.1.4.
Downsampled to 5000 cells.
## R version 3.6.3 (2020-02-29)
## Platform: x86_64-apple-darwin18.7.0 (64-bit)
## Running under: macOS Mojave 10.14.6
##
## Matrix products: default
## BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
## LAPACK: /usr/local/Cellar/openblas/0.3.9/lib/libopenblasp-r0.3.9.dylib
##
## locale:
## [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.9.2.1 knitr_1.28 ggplot2_3.3.0 rmarkdown_2.1 future_1.17.0 sctransform_0.2.1 gsubfn_0.7
## [8] proto_1.0.0 DropSeq.util_2.0 Matrix_1.2-18 data.table_1.12.8 dplyr_0.8.5 Seurat_3.1.5 R.matlab_3.6.2
##
## loaded via a namespace (and not attached):
## [1] Rtsne_0.15 colorspace_1.4-1 ellipsis_0.3.0 ggridges_0.5.2 rprojroot_1.3-2 fs_1.4.1
## [7] rstudioapi_0.11 farver_2.0.3 leiden_0.3.3 listenv_0.8.0 npsurv_0.4-0 remotes_2.1.1
## [13] ggrepel_0.8.2 fansi_0.4.1 codetools_0.2-16 splines_3.6.3 R.methodsS3_1.8.0 lsei_1.2-0
## [19] pkgload_1.0.2 jsonlite_1.6.1 ica_1.0-2 cluster_2.1.0 png_0.1-7 R.oo_1.23.0
## [25] uwot_0.1.8 compiler_3.6.3 httr_1.4.1 backports_1.1.6 assertthat_0.2.1 lazyeval_0.2.2
## [31] cli_2.0.2 htmltools_0.4.0 prettyunits_1.1.1 tools_3.6.3 rsvd_1.0.3 igraph_1.2.5
## [37] gtable_0.3.0 glue_1.4.0 RANN_2.6.1 reshape2_1.4.4 Rcpp_1.0.4.6 vctrs_0.2.4
## [43] gdata_2.18.0 ape_5.3 nlme_3.1-147 crosstalk_1.1.0.1 lmtest_0.9-37 xfun_0.13
## [49] stringr_1.4.0 globals_0.12.5 ps_1.3.2 testthat_2.3.2 lifecycle_0.2.0 irlba_2.3.3
## [55] gtools_3.8.2 devtools_2.3.0 MASS_7.3-51.5 zoo_1.8-7 scales_1.1.0 parallel_3.6.3
## [61] RColorBrewer_1.1-2 yaml_2.2.1 curl_4.3 memoise_1.1.0 reticulate_1.15 pbapply_1.4-2
## [67] gridExtra_2.3 stringi_1.4.6 desc_1.2.0 caTools_1.18.0 pkgbuild_1.0.6 rlang_0.4.5
## [73] pkgconfig_2.0.3 bitops_1.0-6 evaluate_0.14 lattice_0.20-41 ROCR_1.0-7 purrr_0.3.4
## [79] labeling_0.3 patchwork_1.0.0 htmlwidgets_1.5.1 cowplot_1.0.0 tidyselect_1.0.0 processx_3.4.2
## [85] RcppAnnoy_0.0.16 plyr_1.8.6 magrittr_1.5 R6_2.4.1 gplots_3.0.3 pillar_1.4.3
## [91] withr_2.2.0 fitdistrplus_1.0-14 survival_3.1-12 tibble_3.0.1 future.apply_1.5.0 tsne_0.1-3
## [97] crayon_1.3.4 KernSmooth_2.23-16 usethis_1.6.0 grid_3.6.3 callr_3.4.3 digest_0.6.25
## [103] tidyr_1.0.2 R.utils_2.9.2 munsell_0.5.0 viridisLite_0.3.0 sessioninfo_1.1.1